Genetics of Arrhythmias



Genetics of Arrhythmias


Mark E. Anderson

Dawood Darbar

Prince Kannankeril



Overview

In recent years, the identification of gene defects in a vast array of monogenic disorders has revolutionized our understanding of the basic mechanisms underlying numerous disease processes. Mutations in cardiac ion channels have been identified as the basis of a wide range of inherited arrhythmia syndromes, including the congenital long QT syndromes (LQTSs), Brugada syndrome, Lenegre syndrome, Andersen syndrome, and familial atrial fibrillation (AF). More recently, it has been observed that not only transmembrane cardiac ion channels cause cardiac arrhythmias, but also intracellular channel and non–ion conduction proteins that may be pathophysiologically linked to inherited arrhythmias. The identification of genes underlying the inherited arrhythmia syndromes has greatly contributed to our understanding of the substrates for arrhythmia development, but an unexpected complexity has emerged in the genotype-phenotype relationship. Phenotypic expression of a given mutation does not always appear to be uniform in human patients, a finding implying a contribution from environmental factors and/or the presence of other genetically encoded modifiers. Accumulating evidence suggests that “multiple hits” affecting the interaction and integrity of signaling pathways may be responsible for many forms of arrhythmias.

Although we have witnessed significant strides in our understanding of the genetic basis of inherited arrhythmia disorders in the past decade, many challenging issues still need to be addressed. Developments are likely to come from studies using new model systems that assess the function of mutant proteins in preparations that are more closely allied to the physiologic environment in which these proteins are distributed. These more physiologic expression systems will be useful not only to characterize individual mutations, but also to elucidate the effects of mutations on the complex physiology of cardiac cells. In this chapter, we first summarize our present understanding of the molecular basis for cardiac arrhythmias by using the congenital LQTS as a case study in monogenic diseases. Second, ion channel and non–ion channel inherited arrhythmia syndromes are reviewed. Finally, we briefly discuss the use of arrhythmia models that may be used to understand inherited arrhythmia syndromes better.



Genetics Glossary


Allele


Alternate form of a gene.


Alternative splicing


A regulatory mechanism by which variations in the incorporation of a gene’s exons, or coding regions, into mRNA lead to the production of more than one related protein, or isoform.


Codon


A three-base sequence of DNA or RNA that specifies a single amino acid.


Complex disease


Combing the effects of several genes and the environment, also referred to as multifactorial or polygenic.


Compound heterozygote


Carrying two different mutations for one gene, each provided by a different parent.


Conservative mutation


A change in a DNA or RNA sequence that leads to the replacement of one amino acid with a biochemically similar one.


Exon


A region of a gene that codes for a protein.


Frame-shift mutation


The addition or deletion of a number of DNA bases that is not a multiple of three, thus causing a shift in the reading frame of the gene. This shift produces a change in the reading frame of all parts of the gene that are downstream from the mutation, often leading to a premature stop codon and, ultimately, to a truncated protein.


Gain-of-function mutation


A mutation that produces a protein that takes on a new or enhanced function.


Gene dose effect


A relationship between the number of diseased alleles and phenotype severity.


Genetic heterogeneity


Mutations in several genes causing similar phenotype.


Genomics


The study of a functions and interactions of all the genes in the genome, including their interactions with environmental factors.


Genotype


The genetic makeup of an individual; it also refers to the alleles at a given locus.


Haplotype


A group of nearby alleles that are inherited together.



Heterozygous


Carrying two different alleles of a given gene.


Homozygous


Carrying two identical alleles of a given gene.


Intron


A region of a gene that does not code for a protein.


Locus


Location of a gene on a chromosome.


Loss-of-function mutation


A mutation that decreases the production or function of a protein (or does both).


Missense mutation


Substitution of a single DNA base that results in a codon that specifies an alternative amino acid.


Modifier genes


Genes that are not primarily responsible for a trait but that can alter a trait’s expression or severity.


Monogenic


Caused by a mutation in a single gene.


Nonsense mutation


Substitution of a single DNA base that results in a stop codon, thus leading to truncation of a protein.


Penetrance


The likelihood that a person carrying a particular mutant gene will have an altered phenotype.


Phenotype


The observable physical or biochemical characteristics of an organism.


Point mutation


The substitution of a single DNA base in the normal DNA sequence.


Basic Genetic Principles

Hereditary information is encoded in DNA via a sequence of purine (adenine, guanine) and pyrimidine (cytosine, thymine) bases. The hereditary unit is called a gene and consists of a segment of DNA that encodes for a specific protein. There are 30,000 to 35,000 genes in the human genome, and each individual has two copies of each gene called alleles. The human genome has 23 pairs of chromosomes (44 autosomal and 2 sex chromosomes) containing approximately 3 billion base pairs of DNA. Each parent contributes one-half of each chromosome pair and thus one copy of each gene. The site at which a gene is located on a particular chromosome is called the genetic locus. The genetic information on DNA is translated into protein through a translational code passed through messenger RNA (mRNA), in which three bases, referred as a codon, encode for an amino acid. The transcribed mRNA serves as the template that determines the sequence of amino acids in the resulting protein.

DNA nucleotide sequences generally remain constant when passed from parent to child. Base sequence changes are referred to as mutations. Mutations can be the result of environmental factors, including radiation, chemicals, drugs, and errors introduced by the DNA synthetic and editing enzymes. There are several ways to categorize mutations. One is according to the causative mechanism, whereas another is according to their functional effect. When classified according to the genetic cause, point mutations (i.e., a change in a single DNA base in the sequence) are the most common. Many types of point mutations are recognized. One type is a missense mutation, a substitution that leads to an alternative amino acid because of the way in which it changes the codon. Nonsense mutations are a more dramatically deleterious type of point mutations that change the codon to a “stop” codon, a codon that causes the termination of the protein instead of producing an amino acid. Another type of mutation is the frame-shift mutation, which changes the reading frame of the gene downstream from it, often leading to a premature stop codon. Many variants in the human genome sequence have no phenotypic effect. Among these are silent mutations, which replace one base with another, so the resultant codon still codes for the same amino acid. This is a conservative mutation and can occur because codons are redundantly formatted so multiple base pair triplets (codons) can specify the same amino acid. Moreover, mutations may not change the phenotype if the altered codon encodes for an amino acid with similar properties. Nonconservative mutations replace an amino acid with a very different one and are more likely to affect phenotype.

Hereditary diseases are generally classified into three broad categories: (a) chromosomal duplication or deletions, (b) single gene or monogenic disorders, and (c) polygenic or complex traits that are the result of interactions between defects in multiple genes. Our discussion focuses on monogenic and polygenic disorders. Diseases caused by a single genetic defect are referred to as monogenic disorders; they follow mendelian inheritance and are classified as autosomal dominant, autosomal recessive, or X-linked (dominant or recessive). Approximately 5,000 monogenic diseases have been identified, and more than 1,000 genes responsible for these disorders are known. Most single-gene diseases display an autosomal dominant mode of inheritance, in which case approximately half of family members are affected. Monogenic disorders with an autosomal recessive inheritance are secondary to mutations in both copies of the gene; in which case only 25% of children exhibit the phenotype, 50% carry the mutation, and 25% are normal. With X-linked inheritance, only males generally exhibit the disease, whereas females do not show the phenotype, unless the mutation involves a major protein, in which case the females could exhibit the clinical phenotype. In diseases secondary to mitochondrial DNA mutations, inheritance is from the mother, because mitochondrial DNA is primarily inherited from the ovum. In cardiology, there are two major clusters of monogenic disorders: (a) the cardiomyopathies resulting from alterations in sarcomeric and in cytoskeletal proteins and (b) the arrhythmogenic diseases caused by mutations in ion channels and ion channel–controlling proteins such as the LQTS, Brugada syndrome, the short QT syndrome, catecholaminergic polymorphic ventricular tachycardia (CPVT), familial AF, and Andersen syndrome. Polygenic disorders are caused by mutations in multiple genes. Single nucleotide alterations, referred to as single nucleotide polymorphisms, occur with a frequency of approximately 1 per 600 base pair and can account for morphologic distinctions, susceptibility to disease, and response to drugs and therapeutic agents. Polygenic disorders underlie the majority of cardiovascular diseases and are inherently more difficult for assigning genetic causation than is the case for monogenic diseases.

Genetic heterogeneity refers to the observation that different mutations in the same (allele heterogeneity) or different genes (locus heterogeneity) can cause the same phenotype. Within a given family, a single mutation is usually responsible for the disorder in all affected family members. The congenital LQTS provides an example for both types of heterogeneity because they have been mapped to seven different genes (locus heterogeneity), and multiple mutations in each of these genes give rise to disease phenotypes (allelic heterogeneity). Currently, eight genes can cause the phenotype of the congenital LQTS and are responsible for 50% to 60% of clinically diagnosed cases. In contrast, only SCN5A, the primary cardiac sodium (Na) channel gene, is known to cause Brugada syndrome, but several other genes are likely to be implicated in this disease because only 20% of the clinical diagnoses result in positive tests at genetic screening. It is possible that the overlapping phenotypes may necessitate classifying each genetic variant as a separate disease entity based on the specific defect, particularly because emerging data suggest that the genetic substrate may be a major determinant of prognosis in patients harboring different genetic defects.

Numerous genetic and environmental factors can affect expression of a gene mutation. When these factors mask the phenotype, penetrance is said to be low. Hence, the penetrance of a monogenic disease is defined as the percentage of individuals
with a mutant allele who develop the phenotype of the related disease. Penetrance can vary from 10% to 100%. The expressivity of a disease refers to different phenotypic manifestations that can be observed among carriers of the same genetic defect. Variation in penetrance and expressivity of genetic mutations suggests that many factors, including environment and modifier genes, can influence the phenotype of patients with monogenic diseases.


Complexity beyond Monogenic Arrhythmia Syndromes

The first genetic defects causing the congenital LQTS were identified in 1995 by Keating and colleagues (1,2). Since then, hundreds of mutations have been identified in various ion channel subunits and in proteins important for the proper functioning of cardiac ion channels. Although it was initially assumed that all carriers of pathogenic mutations would manifest the corresponding phenotype, it soon became apparent that the clinical consequences of genetic defects are far more variable than expected. However, when variable penetrance and expressivity of the disease are taken into consideration, it is not a surprise that carriers of a DNA mutation may manifest a very wide range of phenotypes.

The genotype and phenotype connection is further complicated by mutations in one gene leading not only to variable phenotypes within the same disease, but also to profoundly different diseases. This diversity is well exemplified by mutations in the lamin A/C gene, which are known to cause at least eight phenotypes (allelic diseases) as varied as dilated cardiomyopathy, Emery-Dreifuss muscular dystrophy, familial partial lipodystrophy, Charcot-Marie-Tooth disease, mandibuloacral dysplasia, Hutchinson-Gilford progeria, lipoatrophy with diabetes, hypertrophic cardiomyopathy, and limb girdle muscular dystrophy. In inherited arrhythmia syndromes, mutations of the cardiac Na channel gene are associated with three diseases (the congenital LQTS, Brugada syndrome, and progressive conduction disease). Similarly, mutations in the KCNQ1 gene encoding the a-subunit of the potassium (K) channel conducting the slow component of the delayed rectifier (IKs) are associated with three distinct diseases (the LQTS, the short QT syndrome, and familial AF). It is therefore clear that the identification of a mutation in a given gene is often insufficient to diagnose a single disease, and the identification of a mutation in an individual with a known disease is not enough to predict the phenotype of that individual.


Genetic Modifiers

Our inability to predict clinical phenotype completely based on in vitro studies is not wholly unexpected especially because the characterization of a mutation is performed in the artificial settings of a noncardiac expression system. These cellular models systems typically utilize an approach based upon overexpression of a disease candidate gene in an immortalized nonmuscle cell line. These cells are very different from cardiac myocytes and do not incorporate key elements such as calcium (Ca) homeostasis, intercellular coupling, second messengers, membrane receptors, and other key proteins essential for phenotypic expression. Thus, improved systems biology approaches are needed to understand and evaluate genotype-phenotype connections in genetic arrhythmia syndromes.


Molecular Basis of Inherited Arrhythmia Syndromes

Cardiac arrhythmias generally result from abnormalities in four classes of protein: (a) ion channels, exchangers, and their modulators (primary electrical disease); (b) cell-to-cell junction proteins, such as those responsible for arrhythmogenic right ventricular cardiomyopathy; (c) contractile sarcomeric proteins, such as those responsible for hypertrophic cardiomyopathy; and (d) cytoskeletal proteins, which are responsible for dilated cardiomyopathy. Tables 58.1,58.2,58.3,58.4 present a list of known genetic disorders based on phenotypic characteristics.


Congenital Long QT Syndrome: A Case Study of Monogenic Arrhythmia Syndromes

Since the initial description of congenital deafness, prolongation of the QT interval, and sudden death by Jervell and Lange-Nielsen in 1957 (3), our understanding of the genetic basis of the congenital LQTS has progressed significantly. Shortly after the autosomal recessive Jervell-Lange-Nielsen syndrome was described, Romano and Ward each independently described an “autosomal dominant” form without congenital deafness (4,5). The findings that the QT interval could be prolonged by right stellectomy and the successful treatment of a medically refractory young patient with the LQTS by left stellectomy led to the hypothesis that the disease was primarily a disorder of cardiac sympathetic innervation (6). Although we now know that this is not the primary cause of the LQTS, the importance of these early observations is evident in that autonomic modulation remains an important therapeutic approach in patients with this syndrome.

The subsequent theory that the underlying cause of the LQTS was an alteration of one of the repolarizing K currents was proposed nearly 10 years before the identification of the first LQTS genes in 1995 (1,2,7,8). Indeed, four forms of the LQTS, and the two most common forms (LQT1 and LQT2), are caused by mutations in genes that encode proteins that form repolarizing K channels. In the late 1990s, the first five LQTS genes were identified (see Table 58.1), all of which encoded proteins that form ion channels underlying the cardiac action potential (Fig. 58.1). The most commonly identified genes, KCNQ1 and KCNH2, encode proteins that form the α-subunits of two major repolarizing K currents, IKs and IKr. Two other LQTS genes encode for the corresponding β-subunits (KCNE1 and KCNE2). The other major LQTS gene, SCN5A, encodes the α-subunit of the cardiac Na channel. Either loss-of-function mutations in K channel genes or gain-of-function mutations in the cardiac Na or Ca channels lead to prolongation of ventricular repolarization and therefore a prolonged QT interval. Furthermore, we now know that the Jervell-Lange-Nielsen syndrome is simply a more severe form of the LQTS, because patients with Romano-Ward syndrome carry a single mutation, whereas it is now accepted that homozygous mutations of KCNQ1 or KCNE1 cause Jervell-Lange-Nielsen syndrome (Fig. 58.2) (9,10). The extracardiac finding of congenital deafness requires the presence of two mutant alleles and results from lack of functioning IKs in the inner ear (11). Patients with Jervell-Lange-Nielsen syndrome are also thought to be highly susceptible to arrhythmias; thus, arrhythmia risk seems partly dependent on “gene dosage.” These first five forms of the LQTS represent classic LQTS, in that single mutations in ion channel genes resulted in action potential prolongation and prolonged QT intervals, with an increased risk for torsades de pointes and sudden death, without significant extracardiac manifestations.








TABLE 58.1 Inherited Arrhythmia Syndromes

















































































































































































Phenotype Rhythm Inheritance Locus Ion channel Gene
VENTRICULAR
LQTS (RW) TdP AD  
LQT1 11p15 IKs KCNQ1, KvLQT1
LQT2 7q35 IKr KCNH2, HERG
LQT3 3p21 INa SCN5A
LQT4 4q25   ANKB, ANK2
LQT5 21q22 IKs KCNE1, minK
LQT6 21q22 IKr KCNE2, MiRP1
LQT7 17q23 IK1 KCNJ2, Kir2.1
LQT8 12p13.3 ICa-L CACNA1C
LQTS (JLN) TdP AR 11p15 IKs KCNQ1, KvLQT1
      21q22 IKr minK
Catecholaminergic VT VT AD 1q42   RYR2
    AR 1p13-p11   CASQ2
Brugada syndrome VT/VF AD 3p21 INa SCN5A
      3p22-25    
Short QT syndrome AF/VF AD 21q22 IKr KCNH2
21q22 IKs KCNQ1, KvLQT1
17q23 IK1 KCNJ2, Kir2.1
SUPRAVENTRICULAR
AF AF AD 10q22-24  
11p15 IKs KCNQ1, KvLQT1
6q14-16  
21q22 IKs KCNE2, MiRP
17q23 IK1 KCNJ2, Kir2.1
Atrial standstill SND, AF AD 3q21 INa SCN5A
Absent sinus rhyhm SND, AF AD  
WPW syndrome AVRT AD   PRKAG2
CONDUCTION DISORDER
Progressive conduction disease AVB AD 19q13 INa SCN5A
      3q21    
AD, autosomal dominant; AF, atrial fibrillation; AR, autosomal recessive; AVB, atrioventricular block; AVRT, atrioventricular reentrant tachycardia; JLN, Jervell and Lange-Nielsen; LQTS, long QT syndrome; RW, Romano-Ward; SND, sinus node dysfunction; TdP, torsades de pointes; VF, ventricular fibrillation; VT, ventricular tachycardia; WPW, Wolff-Parkinson-White syndrome.








TABLE 58.2 Genetic Causes for Arrhythmogenic Right Ventricular Cardiomyopathy


































































  Inheritance Protein Locus Gene Function
ARVC1 AD   14q24.3    
ARVC2 AD Ryanodine receptor 2 1q42 RYR2 Calcium release channel
ARVC3 AD 14q11-q12
ARVC4 AD 2q32
ARVC5 AD 3p23
ARVC6 AD 10p12-p14
ARVC7 AD 10q22
ARVC8 AD Desmoplakin 6p28 DSP Adherens junction protein
ARVC9 AD Plakophilin 2 12p11 PKP2  
Naxos disease AR Plakoglobin 17q21 JUP Cell junction
AD, autosomal dominant; AR, autosomal recessive; ARVC, arrhythmogenic right ventricular cardiomyopathy.








TABLE 58.3 Genetic Causes for Hypertrophic Cardiomyopathy
































































Protein Locus Gene Inheritance
β-Myosin heavy chain 14q12 MYH7 AD
Myosin binding protein-C 11p11.2 MYBPC3 AD
Cardiac troponin T 1q32 TNNT2 AD
Cardiac troponin I 19p13.2 TNN13 AD
α-Tropomyosin 15q22.1 TPM1 AD
Essential myosin light chain 3p21.3 MYL3 AD
Regulatory myosin light chain 12q23-24.3 MYL2 AD
Cardiac α-actin 15q11 ACTC AD
Titin 2q24.1 TTN AD
α-Myosin heavy chain 14q1 MYH6 AD
Cardiac troponin C 3p21.3-3p14.3 TNNC1 AD
AD, autosomal dominant.



With the finding of ANK2 mutations underlying LQT4 (12), we find that the spectrum of LQTS genes is not limited to genes that encode ion channel proteins. ANK2 encodes ankyrin-B, one isoform of a ubiquitously expressed family of proteins originally identified in the erythrocyte as a link between membrane proteins. Cardiomyocytes heterozygous for a null mutation in ankyrin-B display reduced expression and abnormal localization of the Na/Ca exchanger, Na/K adenosine triphosphatase, and InsP3 receptor, but normal expression and localization of other cardiac proteins, including the L-type Ca2+ channel and the cardiac Na+ channel (13). Action potential duration is normal, but myocytes display abnormalities in Ca homeostasis leading to early and delayed afterdepolarizations (12). Further clinical characterization of patients with ANK2 mutations reveals that although these patients are at risk for sudden death, they do not uniformly display prolonged QT intervals (13), a finding suggesting that ankyrin-B diseases are distinct from the LQTS (14). Andersen-Tawil syndrome (ATS), termed by some as LQT7 (15), is the result of mutations in KCNJ2 and is associated with significant extracardiac findings, including periodic paralysis, hypertelorism, and clinodactyly (16). Because many patients with ATS have mild or no prolongation of the QT interval, and the clinical manifestations, electrocardiographic (ECG) characteristics, and outcomes are quite different from those of the LQTS, it seems that ATS is not a subtype of the LQTS, and it has been recommended that the annotation of KCNJ2-positive ATS individuals should be ATS1 rather than LQT7 (17). Recently, mutations in the gene encoding the L-type Ca channel have been found to underlie Timothy syndrome, a rare multisystem disorder characterized by QT prolongation as well as syndactyly, autism, and immune deficiencies (18). This has been termed LQT8 (19), and it does cause a gain of function of ICa due to slowed inactivation, which directly prolongs the QT interval (see Fig. 58.1), similar to the other forms of the LQTS. However, the first described case of Timothy syndrome differs from classic forms of the LQTS in that it is associated with significant extracardiac manifestations. More recently, other Ca2+ channel gene (CACNA1C) mutations have been identified that increase the QT interval but result in less severe extracardiac manifestations (20).








TABLE 58.4 Genetic Causes for Dilated Cardiomyopathy

















































































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Jun 4, 2016 | Posted by in CARDIOLOGY | Comments Off on Genetics of Arrhythmias

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Locus Gene Protein Inheritance
DCM only
   1q32 TNNT2 Cardiac troponin T AD
   2q31 TTN Titin AD
   2q35 DES Desmin AD
   5q33 SGCD δ-Sarcoglycan AD
   6q12-q16 AD
   9q13-q22 AD
   9q22-q31 AD
   10q22-q23 VCL Metavinculin AD
   11p11 MYBPC3 Cardiac myosin binding AD
   14q12 MYH7 Protein C AD
   15q14 ACTC β-Myosin heavy chain AD
   15q22 TPM1 Cardiac actin AD
    α-tropomyosin  
DCM + conduction system disease
   1p1-q21 LMNA Lamins A and C AD