Human Genetics of Arrhythmias



Fig. 62.1
Major cardiac ion channels and associated primary electrical disorders. Abbreviations: I current, ↑ current increase (gain-of-channel function), ↓ current decrease (loss-of-channel function), I K potassium current, I Na sodium current, I Ca calcium current, LQTS long QT syndrome, SQTS short QT syndrome, IVF idiopathic ventricular fibrillation, PFHB progressive familial heart block, ATFB atrial fibrillation, BRGDA Brugada syndrome, SSS sick sinus node syndrome, ERS early repolarization syndrome, JLNS Jervell and Lange-Nielsen syndrome, LVNC left ventricular noncompaction cardiomyopathy. Gene symbols are in italic




Table 62.1
Potassium channel genes (KCNx) and inherited forms of arrhythmias



















































































































































































































Gene

Disease (OMIM)

Protein,

current

Sensitivity

Inheritance

Channel dysfunction

A: >10 %

B: 1–10 %

C: <1 %

KCNA2

BRGDA

ß-Subunit (Kvß3)

C

AD

Gain of function, Ito

Ito

KCNA5

ATFB7

Major subunit

B

AD

Loss of function, IKur

(Kv1.5)

Gain of function, IKur

IKur
 

KCND3

BRGDA

Accessory subunit

C
 
Gain of function, Ito

(Kv4.3)

ATFB

Ito,f

C
 
Gain of function, Ito

KCNQ1

LQT1

α-Subunit

A

AD

Loss of function, IKs

JLN1

A

AR

Loss of function, IKs

SQT2

(Kv7.1)

C

AD

Gain of function, IKs

ATFB3

IKs

C

AD

Gain of function, IKs

KCNH2

LQT2

α-Subunit

A

AD

Loss of function, IKr

(Kv11.1)

SQT1

IKr

C

AD

Gain of function, IKr

KCNE1

LQT5

ß-Subunit

C

AD

Loss of function, IKs

JLN2

IKs/Kr

A

AR

Loss of function, IKs

ATFB
 
C
 
Gain of function, IKs

KCNE2

LQT6

ß-Subunit

C
 
Loss of function, IK

ATFB4

IK

C
 
Gain of function, IK

KCNE3

BRGDA6

ß-Subunit

C
 
Gain of function, IK

ATFB

IK

C
 
Gainof function, IK

KCNE5 (KCNE1L)

IVF

ß-Subunit

C
 
Gain of function, Ito

ATFB

IK

C
 
Gain of function, IKs

KCNJ2

Andersen-Tawil

Major subunit

A

AD

Gain of function, IK1

LQT7

(Kir2.1)

C

AD

Gain of function, IK1

SQT3

IK1

C

AD

Gain of function, IK1

ATFB9
 
C

AD

Gain of function, IK1

KCNJ5

Andersen-Tawil

Major subunit

C

AD

Loss of function, IK,ACh

(Kir3.4)

IK,ACh

LQT13
 
C

AD

Loss of function, IK,ACh

KCNJ8

ERS, IVF

Major subunit

C
 
Gain of function, IK,ATP

(Kir6.1)

IK,ATP


Abbreviations: BRGDA Brugada syndrome, LQTS long QT syndrome, JLNS Jervell and Lange-Nielsen syndrome, SQTS short QT syndrome, ATFB atrial fibrillation, IVF idiopathic ventricular fibrillation, ERS early repolarization syndrome, sensitivity: mutation detection rate per gene, AD autosomal dominant, AR autosomal recessive, (-)



Table 62.2
Sodium channel genes (SCNx) and inherited forms of arrhythmias







































































































































Gene

Disease (OMIM)

Protein,

current

Sensitivity

Inheritance

Channel dysfunction

A: >10 %

B: 1–10 %

C: <1 %

SCN5A

ATFB10

α-Subunit

INaV1.5

A

AD

Loss of function, INa

Gain of function, INa

BRGDA1

A

AD

Loss of function, INa

CMD1E

B

AD

Loss of function, INa

Gain of function, INa

IVF

C
 
Loss of function INa

LQT3

B

AD

Gain of function, INa

PFHB1A (PFHBI)

A

AD

Loss of function, INa

SSS1

B

AD, AR

Loss of function, INa

MEPPC
 
AD

Gain of function, INa

ATRST1

C
   

SCN10A

BRGDA

α-Subunit

INaV1.8

C

AD

Loss of function, INa

SCN1B

BRGDA5

ß-Subunit

INa

C

AD

Loss of function, INa

ATFB13

C
 
Loss of function, INa

SCN2B

BRGDA

ß-Subunit

INa

C

AD

Loss of function, INa

ATFB14

C
 
Loss of function, INa

SCN3B

IVF

ß-Subunit

INa

B
 
Loss of function, INa

BRGDA7

C
 
Loss of function, INa

ATFB16

C
 
Loss of function, INa

SCN4B

LQT10

ß-Subunit

INa

C

AD

Gain of function, INa

ATFB17

C
   


Abbreviations: BRGDA Brugada syndrome, LQTS long QT syndrome, ATFB atrial fibrillation, ATRST atrial standstill, IVF idiopathic ventricular fibrillation, CMD cardiomyopathy, dilated, MEPPC multifocal ectopic Purkinje-related premature contractions, PFHB progressive familial heart block, sensitivity: mutation detection rate per gene, AD autosomal dominant, AR autosomal recessive, (-)



Table 62.3
Calcium channel (CACNx) and cation channel genes and inherited forms of arrhythmias



































































































































Gene

Disease (subform)

Protein

Sensitivity

Inheritance

Dysfunction

A: >10 %

B: 1–10 %

C: <1 %

CACNA1C

Timothy syndrome

α-Subunit

CaV1.2

A

AD

Gain of function, ICaL

LQT8

C

(-)

Gain of function, ICaL

BRGDA3

B

AD

Loss of function, ICaL

SQT4

C

AD

Loss of function, ICaL

ERS, IVF

B

AD

Loss of function, ICaL

CACNA1D

SANDD

α-Subunit

CaV1.3

C

AR

Loss of function, ICaL

CACNA2D1

BRGDA10

α-,δ-Subunit

B

AD

Loss of function, ICaL

ERS, IVF

B

AD

Loss of function, ICaL

SQT6

C

AD

Loss of function, ICaL

CACNB2

BRGDA4

ß-Subunit

B

AD

Loss of function, ICaL

ERS, IVF

B

AD

Loss of function, ICaL

SQT5

C

AD

Loss of function, ICaL

RyR2

CPVT1

Ryanodine receptor 2

(RYR2)

A

AD

Gain of function,

diastolic [Ca2+]i

CASQ2

CPVT2

Calsequestrin 2

C

AR

Loss of function,

diastolic [Ca2+]i

TRDN

CPVT5

Triadin

C

AR

Loss of function

HCN4

SSS2

Cardiac pacemaker (cation) channel

B

AD

Loss of function, If

TRPM4

PFHB1b

Cardiac cation channel (Purkinje cells)

A

AD

Gain of function, ↑


Abbreviations: SSS sick sinus syndrome, BRGDA Brugada syndrome, LQTS long QT syndrome, SQTS short QT syndrome, IVF idiopathic ventricular fibrillation, ERS early repolarization syndrome, PFHB progressive familial heart block, SANDD sinoatrial node dysfunction and deafness, sensitivity: mutation detection rate per gene, AD autosomal dominant, AR, autosomal recessive, (-)


Many identified mutations are “private” (i.e., family specific). Pinpoint protein regions of the native ion channel that cause ion channel dysfunction have been identified and may allow modification by drugs. Pathophysiological and common disease pathways can be recreated in patient-derived cellular models (human-induced pluripotent stem cells; hiPSCs) and transdifferentiated cardiomyocyte-like cells that share the patient’s genetic setting and are subjected to comprehensive biomedical research.

Nearly every inherited arrhythmia is genetically heterogeneous. For some primary electrical disorders (PEDs) of the heart, more than 10 different genes or associated loci are known (e.g., long QT syndrome, atrial or ventricular fibrillation). In addition, there is significant allelic heterogeneity (e.g., > 300 different LQTS mutations). In contrast, in some PEDs the mutation detection rate (“sensitivity of a genetic test”) is still low (e.g., atrial or ventricular fibrillation, 10–20 %) raising the issue of clinical phenotypic conditions. Therefore, precise knowledge and recognition of the genetic forms of PEDs are essential, including differentiation from non-genetic forms. In the light of existing genetic heterogeneity, but also of unforeseen genetic complexity in known disease genes, next-generation sequencing (NGS) technologies will improve modern genetic diagnostics. Together with sufficient pathogenicity variant prediction, this parallelized gene analysis (e.g., several hundreds of genes for a distinct phenotype in a single analysis run) will further replace DNA analysis depending on Sanger sequencing approaches. However, apart from delineating the genomic complexity of monogenic cardiac disorders, it is likely that upon NGS analyses, cardiovascular genes not being previously linked to the patient’s phenotype will be addressed and novel genes may be identified. Importantly, additional confirmatory research steps are required to establish a relationship between a novel gene and the phenotype.



62.2 Inherited Forms of Ventricular Arrhythmias


Familial forms of arrhythmias were described carefully several decades ago [e.g., 16] and were essential to elucidate the genetic basis of arrhythmias. These clinical observations are still important today, since in the era of human molecular genetics, these disorders have been subject to systematic gene investigations and identification. The rapid technological improvements of molecular genetic approaches – currently as whole-exome sequencing by NGS – and the detailed knowledge of the human genome [7, 8] have replaced genetic linkage and many candidate gene analyses (see Chap. 18). NGS certainly will speed up gene identification [913], as, for example, has been shown for familial forms of ventricular fibrillation due to a CALM1 gene mutation [14].

In the following sections, selected types of familial arrhythmias and their genetic bases are discussed. Two international consensus documents are available as guidelines for diagnosis and indications for genetic testing [15, 16].


62.3 Congenital Long QT Syndrome (LQTS)


LQTS is characterized by prolongation of the QT interval, typically measured in a baseline 12-lead or exercise ECG (recommended speed, 50 mm/s). These values have to be corrected for heart rate (by using Bazett’s formula to drive the corrected QTc value). A QTc of >450 ms (males) or >460 ms (females) is indicative for a LQTS but there is overlap with the normal population. The presence of interventricular conduction delay such as complete right or left bundle branch block may limit the use of the QT interval. The QT interval also can be affected by many drugs. In contrast to congenital LQTS, drug-induced QT prolongation (“acquired LQTS”) is often not genetic, and only in 10–15 % of case can the drug be considered to have unmasked “hidden LQTS” [17]. For many physicians, recognition of LQTS and accurate QT interval measurements are still difficult [18]. Due to cascade family investigations and systematic genetic testing, it now has become clear that there are many LQTS mutation carriers without symptoms [19]. These asymptomatic but LQTS mutation-positive patients still have congenital LQTS, even though the term “syndrome” might be misleading. The overall risk for cardiac events or arrest might be lower and mainly is determined by the degree of QT interval prolongation and exposure to risk or event-triggering factors [20, 21].

Since 1995, 13 genes have been associated with congenital LQTS. A significant portion of mutations (sensitivity approx. 35 %) can be identified in the KCNQ1 gene (subform LQT1; chromosome 11p15.5) encoding the α-subunit of the slowly activating, delayed outward rectifying K+ channel IKs (Kv7.1). These subunits form together with additional ß-subunits (e.g., KCNE1; LQT5) tetrameric channels. Mutations in KCNQ1 mainly result in decreased potassium outward current (“loss of function”). In addition to digenic inheritance [in 3–5 %, 22], other severe forms are the autosomal recessive Jervell and Lange-Nielsen syndrome (JLNS) with additional severe, bilateral sensorineural hearing loss. The second key gene for LQTS is the KCNH2 gene on chromosome 7q36.1 that encodes the pore-forming α-subunit of the rapidly activating delayed rectifier potassium channel IKr (Kv11.1; human ether-a-go-go-related gene (hERG)) and plays an essential role in the final repolarization of the ventricular action potential as well as in drug-induced proarrhythmia [23]. “Loss-of-function” mutations in KCNH2 (sensitivity, 30 %) lead to LQT2, whereas opposite effects by a “gain of function” shorten the QT interval (so-called short QT syndrome, SQT1). Another LQTS subform, LQT3, is related to cardiac sodium channel defects by SCN5A gene (chromosome 3p22.2) mutations. The gene encodes the α-subunit from cardiac isoform of the voltage gated sodium channel (Nav1.5); the main electrophysiological mechanism is a “gain of function” (either due to abnormal channel gating or impaired trafficking) with pronounced inward sodium (INa) current, and mutations occur in 10–15 % of LQTS patients. In addition to the molecular and mechanistic differences in the major LQTS subforms, patients differ clinically by differences in the pharmacological response, phenotypic disease modification (e.g., repolarization pattern in surface ECG), and disease severity [e.g., 20, 21].

Concerning additional but mainly rare LQTS subforms (sensitivity <1 % or less), mutations in other ion channel genes or regulatory subunits have been found. These ion channel subunits are encoded by KCNE2 (K+; LQT6), KCNJ2 (K+; LQT7; Andersen-Tawil syndrome), KCNJ5 (K+; LQT13), and SCN4B (Na+; LQT10). Other genes for LQTS, sometimes based on a well-characterized single case report with a proven functional basis of the mutant, are ANK2 (ankyrin-B, LQT4), AKAP9 (A-kinase anchor protein; LQT11), CACNA1C (Ca2+; LQT8; also Timothy syndrome), CALM1 (calmodulin 1), CALM2 (calmodulin 2), CALM3 (calmodulin 3), CAV3 (caveolin 3; LQT9), and SNTA1 (syntrophin alpha 1; LQT12) (Tables 62.162.3).

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Nov 21, 2016 | Posted by in CARDIOLOGY | Comments Off on Human Genetics of Arrhythmias

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