Heart Failure: Impact of Genetics and Genomics




Abstract


This chapter focuses on the impact of genetics and genomics on heart failure. Part one outlines how genetics provides insight to the underpinnings of heart failure. Part two highlights where genetics and genomics has impacted (or has the potential to impact) the management of patients with heart failure. Part two is divided into four main sections that include the impact of genetics and genomics on susceptibility, diagnosis, prognosis, and pharmacogenomics.




Keywords

Heart failure, genetics, genomics, mutation, management, pharmacogenomics

 






  • Chapter Outline



  • Part One 163




    • Genetic Insight Into the Underpinnings of Heart Failure 163




  • Part Two 169




    • Impact of Genetics and Genomics on Susceptibility, Diagnosis, Prognosis, and Pharmacogenomics 169




  • References




Part One


Genetic Insight Into the Underpinnings of Heart Failure


Hypertrophic cardiomyopathy (HCM), dilated cardiomyopathy (DCM), and/or rhythmogenesis cardiomyopathy (ACM) are three of the more common myopathies that lead to heart failure . HCM, thickening of the ventricular wall, and DCM, dilation of the ventricle, are more prevalent in the population than ACM. ACM is associated with loss of cardiac myocytes and fatty infiltration leading to heart failure and sudden cardiac death . Individuals with familial HCM, DCM, or ACM may demonstrate a classical Mendelian or near Mendelian inheritance pattern . In some cases, a mutation in more than one gene exists. In other cases, the myopathy may arise from hypertension, the environment, diet, or additional factors. Table 10.1 provides a list of genes with supportive evidence associating it with HCM, DCM, and/or ACM. This table also provides a short note on the function of the gene. For example, it has been estimated that 80% of all inherited HCM’s result from mutations in genes that encode proteins that comprise the contractile thick filaments MYH7 and comb-C. These proteins are involved in contraction and force generation (see Fig. 10.1 ). A mutation of cMyBP-C results in a decrease or absence of the cMyBP-C protein due to premature stop codons or frame shift mutations. Mice heterozygous for cMyBP-C exhibit increased hypertrophy and decreased ejection fraction compared to controls in response to transverse aortic constriction, suggesting that the genetic mutations in cMYBP-C leading to loss of this protein result in hypertrophy . In some cases, the details as to how the mutation alters the function of the gene/protein are not yet understood. Mutations in MYH7 , which encodes beta-myosin heavy chain, the protein responsible for generating force in the cardiac myocyte, fall into this category . Mutations in MYH7 have been associated with HCM as well as DCM , yet the mechanism(s) as to how the specific mutations lead to HCM or DCM have not been elucidated. Of note, an important finding was published in 2016, identifying methodological shortcomings that have contributed to errors in the medical literature—specifically the misclassification of benign variants as pathogenic due to the inadequate number of ancestry-matched controls . It is expected that variants will be reclassified with time as the number of individuals from different ancestries are sequenced.



Table 10.1

Genes With Mutations Associated With HCM, DCM, and/or ACM. Function is Listed in the Far Right Column
































































































































































































Gene Types of Cardiomyopathy Function
Beta-myosin heavy chain ( MYH7 ) HCM/DCM Thick filament protein responsible for generating force
Cardiac myosin-binding protein-C ( cMyBP-C ) HCM Thick filament protein, involved in myosin cross bridge cycling, regulates contractility
Actin ( ACTC1 ) HCM/DCM Thin filament protein responsible for generating force
Actinin, alpha-2 ( ACTN2 ) HCM/DCM Actin binding protein localized to the Z-disk where they help anchor myofibrillar actin filaments
Myosin, regulatory light chain 2 (cardiac slow) ( MYL2 ) HCM Two pairs of light chains of muscle myosins, essential light chains and regulatory light chains. Essential light chains stabilize the myosin head, and regulatory light chains are important in myosin ATPase in smooth muscle
Myosin light chain kinase 2 ( MYLK2 ) HCM Phosphorylates myosin regulatory light chain
Myozenin 2 ( MYOZ2 ) HCM Interacts with ACTC1 ; role in function of calcineurin
Protein kinase, AMP-activated, noncatalytic, gamma-2 ( PRKAG2 ) HCM A subunit of AMP-activated protein kinase (AMPK)AMPK increases AMP levels and decreases ATP levels
Transthyretin ( TTR ) HCM Mutant TTR protein aggregates in heart and impairs heart function
Ryanodine receptor 2 ( RYR2 ) ACM This receptor regulates calcium in the sarcoplasmic reticulum for excitation–contraction coupling in the heart
Ankyrin repeat domain-containing protein 1 ( ANKRD1 ) HCM/DCM Binds to titin; belongs to muscle ankyrin repeat protein (MARP) family
BCL2-associated athanogene 3 ( BAG3 ) DCM Cellular response to environmental stress; molecular chaperone
Caveolin 3 ( CAV3 ) DCM Belongs to the dystrophin–glycoprotein complex and brings stability to the plasma membrane
Cysteine and glycine-rich protein 3 ( CSRP3 ) HCM/DCM A Z-disk protein involved in sensing stretch
Lim domain-binding 3 ( LDB3 ) HCM/DCM Maintains structural integrity of the Z-disk
Myosin-binding protein-C, cardiac ( MYBPC3 ) HCM/DCM Located in sarcomere and binds to myosin heavy chain. Phosphorylation regulates contraction
Myosin heavy chain 6, cardiac muscle, alpha ( MYH6 ) HCM/DCM Myosin is a major building block of the sarcomere and important for contraction
Myosin heavy chain 7, cardiac muscle, beta, ( MYH7 ) HCM/DCM This isoform is expressed mainly in fetal life and again during hypertrophy, or physical stress
Nexilin ( NEXN ) HCM/DCM An actin binding protein that localizes to focal contacts
Phospholamban ( PLN ) HCM/DCM Sarcoplasmic reticulum protein that regulates calcium
Troponin C, slow ( TNNC1 ) HCM/DCM One of three subunits that forms troponin complex. Regulates calcium ion uptake which results in allosteric changes to thin filament allowing interaction of actin with myosin
Troponin I, cardiac ( TNNI3 ) HCM/DCM One of three subunits that forms the troponin complex, located on the thin filament
Troponin T2, cardiac ( TNNT2 ) HCM/DCM One of three subunits that forms the troponin complex (C, I1/I2/I3 and T1/T2)
Tropomyosin 1 ( TPM1 ) HCM/DCM TPM1 is one of four tropomyosins that bind to actin
Vinculin ( VCL ) HCM/DCM A protein in the cytoskeleton with different patterns of expression based on disease state
Titin ( TTN ) HCM/DCM A giant protein that is expressed in the myocyte that spans half of the sarcomere from Z-line to M-line. Titin is critical in force transmission and holding resting tension
ATP-binding cassette, subfamily C, member 9 ( ABCC9 ) DCM One of two subunits (SUR2) of a potassium ATP channel. The other subunit is BIR
Crystalline, alpha-B ( CRYAB ) DCM A member of a small heat shock protein family
Cardiotrophin 1 ( CTF1 ) HCM Long-term survival factor
GATA zinc finger domain-containing protein 1 ( GATAD1 ) DCM GATAD1 interacts with proteins that are trimethylated at the fourth lysine residue (H3K4Me3)
Laminin, alpha 4 ( LAMA4 ) DCM The major component of basement membranes that is noncollagenous
Lamin A/C ( LMNA ) DCM The LMNA gene encodes two proteins, Lamin A and Lamin C, structural proteins of the nuclear lamina
Nebulette ( NEBL ) DCM Binds to actin and plays role in Z-disk assembly
RNA-binding motif protein 20 ( RBM20 ) DCM A pre-mRNA splicing factor. Titin is the only validated direct mRNA target to date
Sodium channel, voltage-gated, type V, alpha subunit ( SCN5A ) DCM Sodium channel in the heart, mutations are thought to alter the action potential
Sarcoglycan, delta ( SGCD ) DCM Spans the sarcolemma in a complex with dystrophin, sntrophin, and dystroglycans and provides structural linkage between cytoskeleton and extracellular matrix
Titin-cap ( TCAP ) HCM Sarcomeric protein found near periphery of Z disks
Thymopoietin ( TMPO ) DCM TMPO encodes three thymopoietins (alpha, beta, and gamma) that are in the nucleus (alpha) and on the nuclear membrane (beta and gamma)
Desmin ( DES ) DCM An intermediate filament protein that surrounds the Z dis and links the contractile apparatus to the nucleus and the cytoskeleton
Desmoglein-2 ( DSG2 ) DCM A type of adhesive intercellular junction. The adhesion is mediated by desmoglein-2, which is a transmembrane glycoprotein with an ectodomain made up of five extracellular cadherin domains. DSG2 is the most ubiquitious desmoglein (DSG1-DSG4)
Desmoplakin ( DSP ) DCM Desmoplakin is a protein that comprises the electron-dense plaques beneath the plasma membrane that make the membrane anchorage sites for intermediate size filaments
Plakophilin ( PKP2 ) ACM Proteins localized in desmosomal plaques and in cell nucleus
Junction plakoglobin ( JUP ) ACM A cytoplasmic protein
Transmembrane protein 43 ( TMEM43 ) ACM A nuclear envelope protein
Filamin C gene splicing variant ( FLNC ) ACM A novel filamin C gene splicing variant ( FLNC c.7251 +1G>A)
Cadherin 2 ARVC Cadherin mutations in ARVC



Figure 10.1


Schematic diagram of the thick and thin filaments in the cardiac myocyte.

Adopted from Coppini R., Ho C.Y., Ashley E., Day S., Ferrantini C., Girolami F., et al. Clinical phenotype and outcome of hypertrophic cardiomyopathy associated with thin-filament gene mutations. J Am Coll Cardiol. 2014;64:2589–2600.


A landmark paper, published in 2012, showed that Titin truncating mutations are a common cause of DCM, occurring in 25% of familial cases of idiopathic DCM and 18% of sporadic DCM . Titin is known as the largest sarcomeric protein within the heart. Titin is alternatively spliced in the heart and thus expresses as two major isoforms, N2B and N2BA. These isoforms are incorporated into the Z-line, the I-band, the A-band, and the M-line . Mutations in the Titin gene have also been associated with arrhythmogenic right ventricular cardiomyopathy . In more recent work, we have learned that Titin missense variants are very common and are frequently benign . Truncating Titin mutations appear to be rare in HCM . A study from the European INHERITANCE project including 639 patients with sporadic or proven familial DCM was investigated at eight different clinical centers across Europe . Specifically, a standardized protocol was applied for next generation sequencing of 84 genes. When the investigators included predicted disease variants, the genes with the highest number of mutations included titin , plakophilin-2, myosin-binding protein-C-3, desmoplakin, ryanodine receptor 2, desmocollin-2, desmoglein-2, and SCN5A . Greater than 38% of patients had more than one mutation, and 12% of patients carried more than two mutations .


The more recent finding of mutations in bcl-2 -associated athanogene 3 ( BAG3 ) associating with familial DCM highlight an example of how genetics identifies pathways associated with heart failure. BAG3 is a chaperone damage-sensing protein. Bag3-deficient mice develop cardiomyopathy with markers of degeneration of myofibrils and apoptosis . These findings suggest that BAG3 is critical for maintenance of the myocyte or microenvironment in response to the constant stresses. If this pathway is damaged, the heart is at risk of failure. In sum, genetic findings such as BAG3 that underlie DCM may lead to new diagnostic tools or therapies for heart failure.


Recent evidence using whole exome sequencing in two multigenerational Italian families and one United States family suggests that two novel splicing variants in filamin C have been associated with arrhythmogenic DCM in distinct families .

Only gold members can continue reading. Log In or Register to continue

Stay updated, free articles. Join our Telegram channel

Mar 19, 2019 | Posted by in CARDIOLOGY | Comments Off on Heart Failure: Impact of Genetics and Genomics

Full access? Get Clinical Tree

Get Clinical Tree app for offline access