Abstract
This chapter focuses on the impact of genetics and genomics on heart failure. Part one outlines how genetics provides insight to the underpinnings of heart failure. Part two highlights where genetics and genomics has impacted (or has the potential to impact) the management of patients with heart failure. Part two is divided into four main sections that include the impact of genetics and genomics on susceptibility, diagnosis, prognosis, and pharmacogenomics.
Keywords
Heart failure, genetics, genomics, mutation, management, pharmacogenomics
Part One
Genetic Insight Into the Underpinnings of Heart Failure
Hypertrophic cardiomyopathy (HCM), dilated cardiomyopathy (DCM), and/or rhythmogenesis cardiomyopathy (ACM) are three of the more common myopathies that lead to heart failure . HCM, thickening of the ventricular wall, and DCM, dilation of the ventricle, are more prevalent in the population than ACM. ACM is associated with loss of cardiac myocytes and fatty infiltration leading to heart failure and sudden cardiac death . Individuals with familial HCM, DCM, or ACM may demonstrate a classical Mendelian or near Mendelian inheritance pattern . In some cases, a mutation in more than one gene exists. In other cases, the myopathy may arise from hypertension, the environment, diet, or additional factors. Table 10.1 provides a list of genes with supportive evidence associating it with HCM, DCM, and/or ACM. This table also provides a short note on the function of the gene. For example, it has been estimated that 80% of all inherited HCM’s result from mutations in genes that encode proteins that comprise the contractile thick filaments MYH7 and comb-C. These proteins are involved in contraction and force generation (see Fig. 10.1 ). A mutation of cMyBP-C results in a decrease or absence of the cMyBP-C protein due to premature stop codons or frame shift mutations. Mice heterozygous for cMyBP-C exhibit increased hypertrophy and decreased ejection fraction compared to controls in response to transverse aortic constriction, suggesting that the genetic mutations in cMYBP-C leading to loss of this protein result in hypertrophy . In some cases, the details as to how the mutation alters the function of the gene/protein are not yet understood. Mutations in MYH7 , which encodes beta-myosin heavy chain, the protein responsible for generating force in the cardiac myocyte, fall into this category . Mutations in MYH7 have been associated with HCM as well as DCM , yet the mechanism(s) as to how the specific mutations lead to HCM or DCM have not been elucidated. Of note, an important finding was published in 2016, identifying methodological shortcomings that have contributed to errors in the medical literature—specifically the misclassification of benign variants as pathogenic due to the inadequate number of ancestry-matched controls . It is expected that variants will be reclassified with time as the number of individuals from different ancestries are sequenced.
Gene | Types of Cardiomyopathy | Function |
---|---|---|
Beta-myosin heavy chain ( MYH7 ) | HCM/DCM | Thick filament protein responsible for generating force |
Cardiac myosin-binding protein-C ( cMyBP-C ) | HCM | Thick filament protein, involved in myosin cross bridge cycling, regulates contractility |
Actin ( ACTC1 ) | HCM/DCM | Thin filament protein responsible for generating force |
Actinin, alpha-2 ( ACTN2 ) | HCM/DCM | Actin binding protein localized to the Z-disk where they help anchor myofibrillar actin filaments |
Myosin, regulatory light chain 2 (cardiac slow) ( MYL2 ) | HCM | Two pairs of light chains of muscle myosins, essential light chains and regulatory light chains. Essential light chains stabilize the myosin head, and regulatory light chains are important in myosin ATPase in smooth muscle |
Myosin light chain kinase 2 ( MYLK2 ) | HCM | Phosphorylates myosin regulatory light chain |
Myozenin 2 ( MYOZ2 ) | HCM | Interacts with ACTC1 ; role in function of calcineurin |
Protein kinase, AMP-activated, noncatalytic, gamma-2 ( PRKAG2 ) | HCM | A subunit of AMP-activated protein kinase (AMPK)AMPK increases AMP levels and decreases ATP levels |
Transthyretin ( TTR ) | HCM | Mutant TTR protein aggregates in heart and impairs heart function |
Ryanodine receptor 2 ( RYR2 ) | ACM | This receptor regulates calcium in the sarcoplasmic reticulum for excitation–contraction coupling in the heart |
Ankyrin repeat domain-containing protein 1 ( ANKRD1 ) | HCM/DCM | Binds to titin; belongs to muscle ankyrin repeat protein (MARP) family |
BCL2-associated athanogene 3 ( BAG3 ) | DCM | Cellular response to environmental stress; molecular chaperone |
Caveolin 3 ( CAV3 ) | DCM | Belongs to the dystrophin–glycoprotein complex and brings stability to the plasma membrane |
Cysteine and glycine-rich protein 3 ( CSRP3 ) | HCM/DCM | A Z-disk protein involved in sensing stretch |
Lim domain-binding 3 ( LDB3 ) | HCM/DCM | Maintains structural integrity of the Z-disk |
Myosin-binding protein-C, cardiac ( MYBPC3 ) | HCM/DCM | Located in sarcomere and binds to myosin heavy chain. Phosphorylation regulates contraction |
Myosin heavy chain 6, cardiac muscle, alpha ( MYH6 ) | HCM/DCM | Myosin is a major building block of the sarcomere and important for contraction |
Myosin heavy chain 7, cardiac muscle, beta, ( MYH7 ) | HCM/DCM | This isoform is expressed mainly in fetal life and again during hypertrophy, or physical stress |
Nexilin ( NEXN ) | HCM/DCM | An actin binding protein that localizes to focal contacts |
Phospholamban ( PLN ) | HCM/DCM | Sarcoplasmic reticulum protein that regulates calcium |
Troponin C, slow ( TNNC1 ) | HCM/DCM | One of three subunits that forms troponin complex. Regulates calcium ion uptake which results in allosteric changes to thin filament allowing interaction of actin with myosin |
Troponin I, cardiac ( TNNI3 ) | HCM/DCM | One of three subunits that forms the troponin complex, located on the thin filament |
Troponin T2, cardiac ( TNNT2 ) | HCM/DCM | One of three subunits that forms the troponin complex (C, I1/I2/I3 and T1/T2) |
Tropomyosin 1 ( TPM1 ) | HCM/DCM | TPM1 is one of four tropomyosins that bind to actin |
Vinculin ( VCL ) | HCM/DCM | A protein in the cytoskeleton with different patterns of expression based on disease state |
Titin ( TTN ) | HCM/DCM | A giant protein that is expressed in the myocyte that spans half of the sarcomere from Z-line to M-line. Titin is critical in force transmission and holding resting tension |
ATP-binding cassette, subfamily C, member 9 ( ABCC9 ) | DCM | One of two subunits (SUR2) of a potassium ATP channel. The other subunit is BIR |
Crystalline, alpha-B ( CRYAB ) | DCM | A member of a small heat shock protein family |
Cardiotrophin 1 ( CTF1 ) | HCM | Long-term survival factor |
GATA zinc finger domain-containing protein 1 ( GATAD1 ) | DCM | GATAD1 interacts with proteins that are trimethylated at the fourth lysine residue (H3K4Me3) |
Laminin, alpha 4 ( LAMA4 ) | DCM | The major component of basement membranes that is noncollagenous |
Lamin A/C ( LMNA ) | DCM | The LMNA gene encodes two proteins, Lamin A and Lamin C, structural proteins of the nuclear lamina |
Nebulette ( NEBL ) | DCM | Binds to actin and plays role in Z-disk assembly |
RNA-binding motif protein 20 ( RBM20 ) | DCM | A pre-mRNA splicing factor. Titin is the only validated direct mRNA target to date |
Sodium channel, voltage-gated, type V, alpha subunit ( SCN5A ) | DCM | Sodium channel in the heart, mutations are thought to alter the action potential |
Sarcoglycan, delta ( SGCD ) | DCM | Spans the sarcolemma in a complex with dystrophin, sntrophin, and dystroglycans and provides structural linkage between cytoskeleton and extracellular matrix |
Titin-cap ( TCAP ) | HCM | Sarcomeric protein found near periphery of Z disks |
Thymopoietin ( TMPO ) | DCM | TMPO encodes three thymopoietins (alpha, beta, and gamma) that are in the nucleus (alpha) and on the nuclear membrane (beta and gamma) |
Desmin ( DES ) | DCM | An intermediate filament protein that surrounds the Z dis and links the contractile apparatus to the nucleus and the cytoskeleton |
Desmoglein-2 ( DSG2 ) | DCM | A type of adhesive intercellular junction. The adhesion is mediated by desmoglein-2, which is a transmembrane glycoprotein with an ectodomain made up of five extracellular cadherin domains. DSG2 is the most ubiquitious desmoglein (DSG1-DSG4) |
Desmoplakin ( DSP ) | DCM | Desmoplakin is a protein that comprises the electron-dense plaques beneath the plasma membrane that make the membrane anchorage sites for intermediate size filaments |
Plakophilin ( PKP2 ) | ACM | Proteins localized in desmosomal plaques and in cell nucleus |
Junction plakoglobin ( JUP ) | ACM | A cytoplasmic protein |
Transmembrane protein 43 ( TMEM43 ) | ACM | A nuclear envelope protein |
Filamin C gene splicing variant ( FLNC ) | ACM | A novel filamin C gene splicing variant ( FLNC c.7251 +1G>A) |
Cadherin 2 | ARVC | Cadherin mutations in ARVC |
A landmark paper, published in 2012, showed that Titin truncating mutations are a common cause of DCM, occurring in 25% of familial cases of idiopathic DCM and 18% of sporadic DCM . Titin is known as the largest sarcomeric protein within the heart. Titin is alternatively spliced in the heart and thus expresses as two major isoforms, N2B and N2BA. These isoforms are incorporated into the Z-line, the I-band, the A-band, and the M-line . Mutations in the Titin gene have also been associated with arrhythmogenic right ventricular cardiomyopathy . In more recent work, we have learned that Titin missense variants are very common and are frequently benign . Truncating Titin mutations appear to be rare in HCM . A study from the European INHERITANCE project including 639 patients with sporadic or proven familial DCM was investigated at eight different clinical centers across Europe . Specifically, a standardized protocol was applied for next generation sequencing of 84 genes. When the investigators included predicted disease variants, the genes with the highest number of mutations included titin , plakophilin-2, myosin-binding protein-C-3, desmoplakin, ryanodine receptor 2, desmocollin-2, desmoglein-2, and SCN5A . Greater than 38% of patients had more than one mutation, and 12% of patients carried more than two mutations .
The more recent finding of mutations in bcl-2 -associated athanogene 3 ( BAG3 ) associating with familial DCM highlight an example of how genetics identifies pathways associated with heart failure. BAG3 is a chaperone damage-sensing protein. Bag3-deficient mice develop cardiomyopathy with markers of degeneration of myofibrils and apoptosis . These findings suggest that BAG3 is critical for maintenance of the myocyte or microenvironment in response to the constant stresses. If this pathway is damaged, the heart is at risk of failure. In sum, genetic findings such as BAG3 that underlie DCM may lead to new diagnostic tools or therapies for heart failure.
Recent evidence using whole exome sequencing in two multigenerational Italian families and one United States family suggests that two novel splicing variants in filamin C have been associated with arrhythmogenic DCM in distinct families .